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JIMS’ Immobilized Microscopy Suite (JIM)
========================================
**JIM** is a collection of programs designed to simplify the quantitation of *in vitro* TIRF microscopy experiments. In particular, it is designed to analyze experiments where a substrate is immobilized on the surface of a coverslip before fluorescent reagents are bound to the substrate.

Check out the :doc:`getting_started` section for further information, including how to
:ref:`install <installation>` the project.

Contents
--------

.. toctree::

   installation	
   getting_started
   begin_here_generate_traces
   basic_c++_programs
   output_file_formats
   Jimbob
   tut_1_single_channel
   tut_2_multi_channel
   tut_3_photobleaching

.. toctree::
   :maxdepth: 2
   :caption: Contents:


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`